Variant report

Variant	rs6563683
Chromosome Location	chr13:39719561-39719562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:39718311..39720727-chr13:39720966..39723324,2	K562	blood:
2	chr13:39625072..39625743-chr13:39719158..39719753,2	MCF-7	breast:
3	chr13:39719147..39719742-chr13:40186142..40186846,2	MCF-7	breast:
4	chr13:39718832..39719761-chr13:39837531..39838084,2	MCF-7	breast:
5	chr13:39719198..39719712-chr13:39837131..39837687,2	MCF-7	breast:
6	chr13:39719246..39719808-chr13:40250140..40251135,2	K562	blood:
7	chr13:39718635..39719664-chr13:40190328..40190925,3	MCF-7	breast:
8	chr13:39718578..39719659-chr13:39836349..39837386,3	MCF-7	breast:

No data

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10162135	0.95[ASN][1000 genomes]
rs10467464	0.93[ASN][1000 genomes]
rs10870730	0.94[ASN][1000 genomes]
rs1333435	0.93[ASN][1000 genomes]
rs1333436	0.93[ASN][1000 genomes]
rs1333437	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1413042	0.94[ASN][1000 genomes]
rs1413043	0.94[ASN][1000 genomes]
rs1887108	0.87[AMR][1000 genomes]
rs2324130	0.84[AMR][1000 genomes]
rs4270047	0.87[AMR][1000 genomes]
rs4941905	0.84[AMR][1000 genomes]
rs4943631	0.83[AMR][1000 genomes]
rs4943632	0.83[AMR][1000 genomes]
rs4943639	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563680	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs726051	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7321413	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7328891	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7334550	0.93[ASN][1000 genomes]
rs7336775	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7990331	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7997688	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7998548	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9315654	0.87[AMR][1000 genomes]
rs9315655	0.93[ASN][1000 genomes]
rs9315656	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9532332	0.93[ASN][1000 genomes]
rs9548637	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548639	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548640	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548643	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548644	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9548645	0.83[ASN][1000 genomes]
rs9566403	0.83[ASN][1000 genomes]
rs9576732	0.93[ASN][1000 genomes]
rs9576733	0.93[ASN][1000 genomes]
rs9576735	0.94[ASN][1000 genomes]
rs9576738	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576739	0.95[ASN][1000 genomes]
rs9576740	0.95[ASN][1000 genomes]
rs9603510	0.97[ASN][1000 genomes]
rs9603512	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39719200-39719600	Enhancers	Aorta	Aorta
2	chr13:39719200-39719600	Flanking Active TSS	Brain Angular Gyrus	brain
3	chr13:39719200-39719600	Flanking Active TSS	Brain Cingulate Gyrus	brain
4	chr13:39719200-39719600	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr13:39719200-39719600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr13:39719200-39719600	Active TSS	Stomach Smooth Muscle	stomach
7	chr13:39719400-39719600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:39719400-39719600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:39719400-39719600	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:39719400-39719600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:39719400-39719600	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr13:39719400-39719600	Flanking Active TSS	Fetal Lung	lung
13	chr13:39719400-39719600	Flanking Active TSS	Ovary	ovary
14	chr13:39719400-39719600	Enhancers	Rectal Smooth Muscle	rectum
15	chr13:39719400-39719600	Flanking Bivalent TSS/Enh	Osteobl	bone
16	chr13:39719400-39719800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr13:39719400-39719800	Enhancers	Adipose Nuclei	Adipose

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