Variant report

Variant	rs9548640
Chromosome Location	chr13:39703385-39703386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10162135	0.94[ASN][1000 genomes]
rs10467464	0.95[ASN][1000 genomes]
rs10870730	0.96[ASN][1000 genomes]
rs1333435	0.95[ASN][1000 genomes]
rs1333436	0.95[ASN][1000 genomes]
rs1333437	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1359653	0.91[AMR][1000 genomes]
rs1359654	0.91[AMR][1000 genomes]
rs1413042	0.96[ASN][1000 genomes]
rs1413043	0.96[ASN][1000 genomes]
rs1887108	0.80[AMR][1000 genomes]
rs1887109	0.91[AMR][1000 genomes]
rs2324129	0.91[AMR][1000 genomes]
rs2324130	0.80[AMR][1000 genomes]
rs4270047	0.80[AMR][1000 genomes]
rs4943628	0.89[AMR][1000 genomes]
rs4943629	0.89[AMR][1000 genomes]
rs4943639	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563680	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563683	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs726051	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321413	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7328891	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7334550	0.95[ASN][1000 genomes]
rs7336775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7990331	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990542	0.91[AMR][1000 genomes]
rs7997688	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998548	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315652	0.91[AMR][1000 genomes]
rs9315653	0.91[AMR][1000 genomes]
rs9315654	0.80[AMR][1000 genomes]
rs9315655	0.95[ASN][1000 genomes]
rs9315656	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9532332	0.95[ASN][1000 genomes]
rs9548614	0.91[AMR][1000 genomes]
rs9548615	0.91[AMR][1000 genomes]
rs9548616	0.91[AMR][1000 genomes]
rs9548618	0.91[AMR][1000 genomes]
rs9548619	0.91[AMR][1000 genomes]
rs9548620	0.91[AMR][1000 genomes]
rs9548636	0.89[AMR][1000 genomes]
rs9548637	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9548639	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548643	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548644	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9548645	0.82[ASN][1000 genomes]
rs9566403	0.82[ASN][1000 genomes]
rs9576732	0.95[ASN][1000 genomes]
rs9576733	0.95[ASN][1000 genomes]
rs9576735	0.96[ASN][1000 genomes]
rs9576738	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576739	0.94[ASN][1000 genomes]
rs9576740	0.94[ASN][1000 genomes]
rs9603510	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603512	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39700400-39704400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:39700800-39703400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:39701400-39703400	Weak transcription	Brain Angular Gyrus	brain
4	chr13:39701400-39706800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:39701600-39703600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:39701600-39704200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:39701600-39704400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:39702200-39704200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:39702200-39706400	Weak transcription	Fetal Intestine Large	intestine
10	chr13:39702600-39703400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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