Variant report

Variant	rs9316272
Chromosome Location	chr13:47828761-47828762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10220095	1.00[JPT][hapmap]
rs13378547	1.00[JPT][hapmap]
rs1413075	0.88[EUR][1000 genomes]
rs2065563	0.91[EUR][1000 genomes]
rs7320763	0.88[EUR][1000 genomes]
rs7330865	0.88[EUR][1000 genomes]
rs8000212	0.88[EUR][1000 genomes]
rs8001433	0.86[EUR][1000 genomes]
rs9316290	1.00[JPT][hapmap]
rs9534600	0.80[EUR][1000 genomes]
rs9591016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591018	0.90[EUR][1000 genomes]
rs9591026	0.88[EUR][1000 genomes]
rs9591028	0.88[EUR][1000 genomes]
rs9591029	0.88[EUR][1000 genomes]
rs9595631	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9595633	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9595643	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832599	chr13:47703075-47873855	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv561585	chr13:47808232-47839338	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv455878	chr13:47822976-47842680	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv561586	chr13:47822976-47842680	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv1046560	chr13:47826023-47854425	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47824800-47830400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:47825000-47830400	Weak transcription	NH-A	brain
3	chr13:47825400-47830400	Weak transcription	NHEK	skin
4	chr13:47827200-47830600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:47827400-47830600	Weak transcription	Osteobl	bone
6	chr13:47827600-47830400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:47827600-47832200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr13:47828000-47830200	Weak transcription	NHDF-Ad	bronchial
9	chr13:47828000-47830400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:47828400-47829400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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