Variant report

Variant	rs9534600
Chromosome Location	chr13:47912516-47912517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10220095	1.00[JPT][hapmap]
rs13378547	1.00[JPT][hapmap]
rs1413075	0.87[EUR][1000 genomes]
rs2065563	0.89[EUR][1000 genomes]
rs7320763	0.87[EUR][1000 genomes]
rs7330865	0.87[EUR][1000 genomes]
rs8000212	0.87[EUR][1000 genomes]
rs8001433	0.85[EUR][1000 genomes]
rs9316272	0.80[EUR][1000 genomes]
rs9316290	1.00[JPT][hapmap]
rs9591016	0.80[EUR][1000 genomes]
rs9591018	0.89[EUR][1000 genomes]
rs9591026	0.87[EUR][1000 genomes]
rs9591028	0.87[EUR][1000 genomes]
rs9591029	0.87[EUR][1000 genomes]
rs9595631	0.85[EUR][1000 genomes]
rs9595633	0.89[EUR][1000 genomes]
rs9595643	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47911800-47912600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:47911800-47912600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr13:47911800-47912600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:47911800-47912800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:47911800-47912800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:47911800-47912800	Enhancers	NHLF	lung
7	chr13:47911800-47913000	Enhancers	NH-A	brain
8	chr13:47912000-47912600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:47912000-47912600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:47912000-47912600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:47912000-47912600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:47912000-47912600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:47912000-47912800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:47912000-47912800	Enhancers	HSMM	muscle
15	chr13:47912000-47912800	Enhancers	NHDF-Ad	bronchial
16	chr13:47912200-47912600	Enhancers	Aorta	Aorta
17	chr13:47912200-47912600	Enhancers	Fetal Muscle Trunk	muscle
18	chr13:47912200-47912800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr13:47912200-47912800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:47912200-47912800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:47912200-47912800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:47912400-47912800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr13:47912400-47912800	Enhancers	Osteobl	bone
24	chr13:47912400-47913000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:47912400-47913000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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