Variant report

Variant	rs9317636
Chromosome Location	chr13:67675352-67675353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:67674917..67677595-chr13:67687583..67689856,3	K562	blood:
2	chr13:67673168..67676018-chr13:67680338..67682100,2	K562	blood:
3	chr13:67675315..67677350-chr13:67683836..67685961,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17082025	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17082105	0.92[LWK][hapmap];0.85[MKK][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs17082106	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17195224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17517037	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17517404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17517922	1.00[JPT][hapmap]
rs17589160	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1927823	0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1927825	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes]
rs2181880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2209902	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs260172	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs7329084	1.00[CHB][hapmap]
rs7983216	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs9592498	0.94[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9599174	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs9599180	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9599182	0.94[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9599183	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9599184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9599188	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1040715	chr13:67668189-67699198	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv832641	chr13:67671691-67708713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67667800-67678600	Enhancers	Brain Substantia Nigra	brain
2	chr13:67669200-67676000	Weak transcription	Adipose Nuclei	Adipose
3	chr13:67670800-67677800	Weak transcription	K562	blood
4	chr13:67671000-67676000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr13:67672000-67677600	Active TSS	A549	lung
6	chr13:67672800-67676400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:67673000-67675800	Enhancers	Brain Cingulate Gyrus	brain
8	chr13:67673200-67676000	Enhancers	Brain Hippocampus Middle	brain
9	chr13:67673600-67675600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:67674000-67676400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:67674200-67676000	Enhancers	HSMM	muscle
12	chr13:67674400-67676000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:67674600-67675400	Flanking Active TSS	Hela-S3	cervix
14	chr13:67674600-67675600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:67674600-67676000	Enhancers	Brain Anterior Caudate	brain
16	chr13:67674600-67676200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr13:67674600-67676400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr13:67674800-67676000	Enhancers	Brain Angular Gyrus	brain
19	chr13:67675000-67675400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:67675000-67675400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr13:67675000-67675400	Enhancers	NH-A	brain
22	chr13:67675000-67675800	Enhancers	HSMMtube	muscle
23	chr13:67675000-67676000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr13:67675000-67676000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr13:67675200-67676400	Enhancers	Cortex derived primary cultured neurospheres	brain

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