Variant report

Variant	rs9599183
Chromosome Location	chr13:67694714-67694715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67686150..67689268-chr13:67693283..67697595,5	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17082025	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17082106	1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs17195224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17517037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17517404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17517922	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17589160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1927823	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1927825	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2181880	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2209902	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs260172	1.00[JPT][hapmap]
rs7329084	1.00[CHB][hapmap]
rs7983216	1.00[JPT][hapmap]
rs9317636	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9592498	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9599174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9599182	1.00[JPT][hapmap]
rs9599184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9599188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1040715	chr13:67668189-67699198	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv832641	chr13:67671691-67708713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67688400-67695000	Weak transcription	K562	blood
2	chr13:67689600-67701400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr13:67692200-67694800	Enhancers	Brain Angular Gyrus	brain
4	chr13:67692600-67696600	Enhancers	Liver	Liver
5	chr13:67692800-67695400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:67693200-67696000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:67693200-67699200	Weak transcription	Brain Anterior Caudate	brain
8	chr13:67693400-67695600	Enhancers	HMEC	breast
9	chr13:67693600-67695000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr13:67693600-67695600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:67693600-67696000	Enhancers	NHEK	skin
12	chr13:67693600-67696200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:67694000-67695000	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:67694000-67696000	Weak transcription	Brain Substantia Nigra	brain
15	chr13:67694000-67708400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr13:67694200-67695600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr13:67694600-67695000	Flanking Active TSS	A549	lung
18	chr13:67694600-67695000	Enhancers	Hela-S3	cervix
19	chr13:67694600-67695400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:67694600-67695400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr13:67694600-67695400	Weak transcription	HSMM	muscle
22	chr13:67694600-67698200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:67694600-67699000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:67694600-67700800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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