Variant report

Variant	rs931766
Chromosome Location	chr6:54726869-54726870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54718981..54722041-chr6:54724023..54729682,8	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10456176	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10948866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10948867	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10948870	0.95[ASN][1000 genomes]
rs1155749	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12192659	0.89[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes]
rs12208341	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12208348	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12211168	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1393776	0.88[CHB][hapmap]
rs1472679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs148109	0.81[CEU][hapmap]
rs171224	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs181155	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs1963697	0.88[CHB][hapmap]
rs2143798	0.82[ASN][1000 genomes]
rs2179786	0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2207025	0.85[CEU][hapmap]
rs2207026	0.87[CEU][hapmap]
rs239781	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs239783	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs239790	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs239796	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs239801	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs239837	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs2816811	0.81[CEU][hapmap]
rs2816812	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs4715489	0.95[ASN][1000 genomes]
rs6459034	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs6910384	0.95[ASN][1000 genomes]
rs6918402	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6926997	0.88[CHB][hapmap]
rs6937970	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7741915	0.82[CHB][hapmap]
rs7752349	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7761336	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7765721	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs924712	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs931767	0.96[ASN][1000 genomes]
rs9349740	0.88[CHB][hapmap]
rs9370345	0.87[CHB][hapmap]
rs9382403	0.88[CHB][hapmap]
rs9396003	0.95[ASN][1000 genomes]
rs971526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs973205	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs988913	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54715400-54731200	Weak transcription	Hela-S3	cervix
2	chr6:54721200-54727000	Weak transcription	Fetal Kidney	kidney
3	chr6:54721200-54727000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:54721200-54730000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:54724200-54727400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:54725400-54731400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:54725600-54729800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:54725600-54737400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:54725600-54737600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:54725800-54727000	Weak transcription	Gastric	stomach
11	chr6:54725800-54727200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:54725800-54727200	Enhancers	Stomach Mucosa	stomach
13	chr6:54725800-54730000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:54725800-54730000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:54725800-54730000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:54726200-54727000	Weak transcription	NHEK	skin
17	chr6:54726200-54727400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:54726400-54727000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:54726400-54728400	Enhancers	Fetal Intestine Small	intestine
20	chr6:54726600-54727000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:54726600-54727000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:54726600-54727200	Enhancers	Fetal Heart	heart
23	chr6:54726600-54728400	Enhancers	Fetal Intestine Large	intestine
24	chr6:54726600-54739600	Weak transcription	Small Intestine	intestine
25	chr6:54726800-54727000	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr6:54726800-54727200	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:54726800-54727200	Weak transcription	HMEC	breast

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