Variant report

Variant	rs9318402
Chromosome Location	chr13:76707007-76707008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1330432	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1330433	0.86[EUR][1000 genomes]
rs56296837	0.86[EUR][1000 genomes]
rs56312793	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7317999	0.89[CEU][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7335526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335963	0.89[CEU][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9318401	0.84[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9573795	0.87[EUR][1000 genomes]
rs9573796	0.84[EUR][1000 genomes]
rs9600652	1.00[CEU][hapmap]
rs9600653	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900580	chr13:76665408-76735400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76706800-76709400	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links