Variant report

Variant	rs9318401
Chromosome Location	chr13:76705716-76705717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr13:76705688-76705824	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RN7SL571P	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1330432	0.86[EUR][1000 genomes]
rs1330433	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2089616	0.81[ASN][1000 genomes]
rs4884037	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4884041	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4885383	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4885384	0.84[ASN][1000 genomes]
rs4885385	0.93[ASN][1000 genomes]
rs56296837	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56312793	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66773562	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs67040089	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7317999	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335526	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7335963	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9318402	0.84[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9565243	0.84[ASN][1000 genomes]
rs9573776	0.82[ASN][1000 genomes]
rs9573781	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs9573795	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9573796	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9600652	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9600653	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900580	chr13:76665408-76735400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76704000-76705800	Weak transcription	Fetal Heart	heart
2	chr13:76704000-76705800	Weak transcription	Fetal Lung	lung

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