Variant report

Variant	rs4885385
Chromosome Location	chr13:76703886-76703887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11149021	0.84[ASN][1000 genomes]
rs1330433	0.87[ASN][1000 genomes]
rs1576533	0.90[EUR][1000 genomes]
rs1576537	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1912034	0.84[ASN][1000 genomes]
rs1912035	0.90[EUR][1000 genomes]
rs2089616	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4884035	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4884037	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4884041	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4885383	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4885384	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56296837	0.90[ASN][1000 genomes]
rs56312793	0.90[ASN][1000 genomes]
rs66773562	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67040089	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7317999	0.85[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs7335963	0.84[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9318401	0.84[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs9318402	0.81[CEU][hapmap]
rs9565243	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9573776	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9573781	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9573795	0.90[ASN][1000 genomes]
rs9573796	0.90[ASN][1000 genomes]
rs9600652	0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap]
rs9600653	0.93[ASN][1000 genomes]
rs962664	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900580	chr13:76665408-76735400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76703200-76704000	Enhancers	Fetal Heart	heart
2	chr13:76703200-76704000	Enhancers	HSMMtube	muscle
3	chr13:76703400-76704000	Enhancers	Fetal Lung	lung
4	chr13:76703400-76704000	Enhancers	Right Atrium	heart
5	chr13:76703600-76704000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:76703600-76704600	Enhancers	Fetal Muscle Leg	muscle

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