Variant report

Variant	rs9565243
Chromosome Location	chr13:76695873-76695874
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1576533	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1576537	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1912035	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2089616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4884035	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4884037	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4884041	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4885383	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4885384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4885385	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56296837	0.82[ASN][1000 genomes]
rs56312793	0.82[ASN][1000 genomes]
rs66773562	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67040089	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7317999	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7335963	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9318401	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9573776	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9573781	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9573795	0.82[ASN][1000 genomes]
rs9573796	0.82[ASN][1000 genomes]
rs9600652	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9600653	0.84[ASN][1000 genomes]
rs962664	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900580	chr13:76665408-76735400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1006197	chr13:76692536-76696027	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76692600-76697400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links