Variant report

Variant	rs9318657
Chromosome Location	chr13:80375880-80375881
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1158596	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1160131	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1414109	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4319636	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7321213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7324675	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9318656	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9530960	0.92[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545192	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9545193	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9545204	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9545245	1.00[YRI][hapmap]
rs9574473	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9574484	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9601268	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80367800-80377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:80373600-80377000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:80373600-80377000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:80373600-80377400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:80373600-80378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:80373600-80378000	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:80373800-80377000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:80373800-80377600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:80373800-80378000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:80373800-80378200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:80373800-80378200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:80373800-80379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:80374200-80379600	Weak transcription	HSMMtube	muscle
14	chr13:80374200-80384000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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