Variant report

Variant	rs9545245
Chromosome Location	chr13:80445558-80445559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2329140	0.81[ASN][1000 genomes]
rs9318657	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043768	chr13:80398379-80447095	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1048990	chr13:80419496-80456454	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1044254	chr13:80419496-80457686	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80442000-80448600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:80443200-80445600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:80443800-80447000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:80444000-80445600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:80444000-80445600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:80444000-80448800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:80444200-80445600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:80444200-80445800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr13:80444600-80447000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:80444600-80447000	Weak transcription	Fetal Thymus	thymus
11	chr13:80444800-80445800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:80444800-80448600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:80444800-80448600	Weak transcription	Fetal Brain Male	brain
14	chr13:80444800-80448600	Weak transcription	NHEK	skin
15	chr13:80445000-80448600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:80445400-80445600	Enhancers	Thymus	Thymus
17	chr13:80445400-80448600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:80445400-80448800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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