Variant report

Variant	rs9321408
Chromosome Location	chr6:133974410-133974411
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2015084	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4470864	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6569889	0.90[AMR][1000 genomes]
rs6569890	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6569892	0.84[AMR][1000 genomes]
rs6569894	0.84[AMR][1000 genomes]
rs6900835	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6900893	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7738973	0.84[AMR][1000 genomes]
rs7750428	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9483598	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9483599	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9483600	0.90[AMR][1000 genomes]
rs9493685	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3449689	chr6:133971159-133975207	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133970400-133976000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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