Variant report

Variant	rs9321423
Chromosome Location	chr6:134279587-134279588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134275087..134281858-chr6:134303258..134309045,8	K562	blood:
2	chr6:134276652..134279783-chr6:134349366..134352805,3	K562	blood:
3	chr6:134278042..134279721-chr6:134341535..134344135,2	K562	blood:
4	chr6:134279544..134281858-chr6:134302522..134305024,3	K562	blood:
5	chr6:134259723..134262365-chr6:134277742..134281079,4	K562	blood:
6	chr6:134274112..134275882-chr6:134279566..134281493,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1385067	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2220135	0.84[CHB][hapmap];0.88[JPT][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs228867	0.96[CEU][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2327437	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6919121	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap]
rs9375994	0.81[CEU][hapmap]
rs9385675	0.93[ASW][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9399083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9493790	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134275400-134289200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:134275600-134280200	Weak transcription	Lung	lung
3	chr6:134275600-134281800	Weak transcription	Placenta	Placenta
4	chr6:134275600-134283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:134276000-134280400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:134276000-134280400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:134276200-134280600	Enhancers	Liver	Liver
8	chr6:134276200-134283000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:134276200-134299000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:134276200-134303000	Weak transcription	HSMMtube	muscle
11	chr6:134276400-134280200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:134276400-134280800	Weak transcription	Gastric	stomach
13	chr6:134276400-134281000	Weak transcription	Aorta	Aorta
14	chr6:134276400-134283000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:134276400-134284600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:134276400-134285200	Weak transcription	Osteobl	bone
17	chr6:134276400-134285800	Weak transcription	Stomach Mucosa	stomach
18	chr6:134276400-134286200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:134276400-134290800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:134276400-134291000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:134276600-134280000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:134276600-134280200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:134276600-134280200	Weak transcription	Left Ventricle	heart
24	chr6:134276600-134280200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:134276600-134281000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:134276600-134281200	Weak transcription	HMEC	breast
27	chr6:134276600-134281200	Weak transcription	NHEK	skin
28	chr6:134276600-134281800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:134276600-134282400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:134276600-134283000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:134276600-134283000	Weak transcription	Right Ventricle	heart
32	chr6:134276600-134283200	Weak transcription	Spleen	Spleen
33	chr6:134276600-134284600	Weak transcription	NH-A	brain
34	chr6:134276600-134288600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:134276600-134288800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:134276600-134288800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:134276600-134288800	Weak transcription	HSMM	muscle
38	chr6:134276600-134293000	Weak transcription	Fetal Lung	lung
39	chr6:134276600-134302800	Weak transcription	Fetal Kidney	kidney
40	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
41	chr6:134276800-134280200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:134276800-134280200	Weak transcription	Ovary	ovary
43	chr6:134276800-134281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:134276800-134281000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:134276800-134281600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:134276800-134285800	Weak transcription	Fetal Brain Male	brain
47	chr6:134277200-134282000	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr6:134277200-134282800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:134277400-134288000	Weak transcription	NHLF	lung
50	chr6:134277800-134279600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links