Variant report

Variant	rs9385675
Chromosome Location	chr6:134313643-134313644
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134303582..134306590-chr6:134312857..134315444,3	K562	blood:
2	chr6:134310170..134314826-chr6:134315037..134317110,5	K562	blood:
3	chr6:134308615..134311240-chr6:134311947..134314798,2	MCF-7	breast:
4	chr6:134302500..134304779-chr6:134313262..134314807,2	MCF-7	breast:
5	chr6:134310647..134312646-chr6:134313055..134315565,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10872420	0.82[ASN][1000 genomes]
rs1385067	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1980503	0.84[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2220135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs228867	0.81[GIH][hapmap]
rs4896019	0.96[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs6569920	0.84[CHB][hapmap];1.00[YRI][hapmap]
rs6919121	0.92[YRI][hapmap]
rs9321423	0.93[ASW][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9389124	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs9399083	0.84[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9402554	0.84[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9493790	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9385675	MAP3K5	cis	cerebellum	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
2	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
4	chr6:134295000-134313800	Weak transcription	Spleen	Spleen
5	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:134299400-134313800	Weak transcription	Right Ventricle	heart
7	chr6:134299800-134314000	Weak transcription	Fetal Brain Male	brain
8	chr6:134300400-134315400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:134304800-134313800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:134304800-134314400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:134304800-134315600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:134304800-134324000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:134305000-134314000	Weak transcription	Brain Angular Gyrus	brain
16	chr6:134305000-134314000	Weak transcription	Brain Substantia Nigra	brain
17	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
18	chr6:134306000-134324000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:134306000-134324000	Weak transcription	Brain Anterior Caudate	brain
20	chr6:134306200-134316000	Weak transcription	Fetal Intestine Large	intestine
21	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:134306800-134314800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:134307400-134313800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:134307400-134314000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:134307400-134316400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:134307400-134316600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:134307600-134314800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:134307800-134316800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:134307800-134320400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:134308000-134313800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:134308000-134318400	Weak transcription	Primary T cells from cord blood	blood
32	chr6:134308200-134313800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:134308200-134313800	Weak transcription	Left Ventricle	heart
34	chr6:134308400-134314000	Weak transcription	Adipose Nuclei	Adipose
35	chr6:134308400-134316200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:134308400-134320400	Weak transcription	Placenta	Placenta
37	chr6:134308600-134315600	Weak transcription	Fetal Brain Female	brain
38	chr6:134308800-134319600	Weak transcription	Liver	Liver
39	chr6:134309400-134327600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:134309600-134313800	Weak transcription	Ovary	ovary
41	chr6:134310200-134313800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:134310800-134314000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:134311600-134316200	Enhancers	K562	blood
44	chr6:134311800-134313800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:134311800-134314200	Enhancers	NHDF-Ad	bronchial
46	chr6:134311800-134315200	Enhancers	Pancreas	Pancrea
47	chr6:134311800-134315200	Enhancers	Osteobl	bone
48	chr6:134311800-134315400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:134312000-134314200	Enhancers	NHLF	lung
50	chr6:134312000-134314400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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