Variant report

Variant	rs10872420
Chromosome Location	chr6:134315632-134315633
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134314949..134316554-chr6:134380076..134382167,2	K562	blood:
2	chr6:134310170..134314826-chr6:134315037..134317110,5	K562	blood:
3	chr6:134315554..134318133-chr6:134326472..134328419,3	MCF-7	breast:
4	chr6:134315112..134316852-chr6:134345160..134347721,2	K562	blood:
5	chr6:134307763..134310041-chr6:134313958..134317124,3	K562	blood:
6	chr6:134313929..134316149-chr6:134331363..134333059,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1385066	0.80[EUR][1000 genomes]
rs2220135	0.82[ASN][1000 genomes]
rs4896019	0.80[EUR][1000 genomes]
rs9385675	0.82[ASN][1000 genomes]
rs9389124	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
3	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:134304800-134324000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
8	chr6:134306000-134324000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:134306000-134324000	Weak transcription	Brain Anterior Caudate	brain
10	chr6:134306200-134316000	Weak transcription	Fetal Intestine Large	intestine
11	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:134307400-134316400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:134307400-134316600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:134307800-134316800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:134307800-134320400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:134308000-134318400	Weak transcription	Primary T cells from cord blood	blood
17	chr6:134308400-134316200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:134308400-134320400	Weak transcription	Placenta	Placenta
19	chr6:134308800-134319600	Weak transcription	Liver	Liver
20	chr6:134309400-134327600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:134311600-134316200	Enhancers	K562	blood
22	chr6:134312000-134315800	Weak transcription	Primary B cells from cord blood	blood
23	chr6:134312200-134315800	Weak transcription	GM12878-XiMat	blood
24	chr6:134312200-134322000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:134312400-134316000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:134312400-134316400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:134312400-134316600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:134312400-134316600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:134312400-134317600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:134312400-134321000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:134312400-134323200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:134312600-134323200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:134312800-134317000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:134312800-134317600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:134312800-134318400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:134313000-134317200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:134313600-134317600	Weak transcription	HSMMtube	muscle
39	chr6:134313800-134316000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:134313800-134336400	Weak transcription	Psoas Muscle	Psoas
41	chr6:134314000-134316000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:134314200-134316000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:134314200-134316400	Weak transcription	NHLF	lung
44	chr6:134314200-134318200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:134314200-134320600	Weak transcription	Left Ventricle	heart
46	chr6:134314200-134324000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:134314200-134324200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:134314200-134328000	Weak transcription	Lung	lung
49	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:134314600-134317400	Weak transcription	NH-A	brain

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