Variant report

Variant	rs1385066
Chromosome Location	chr6:134310874-134310875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134304345..134307619-chr6:134307784..134311242,6	K562	blood:
2	chr6:134310647..134312646-chr6:134313055..134315565,2	MCF-7	breast:
3	chr6:134310170..134314826-chr6:134315037..134317110,5	K562	blood:
4	chr6:134305563..134309080-chr6:134310830..134313541,5	MCF-7	breast:
5	chr6:134308615..134311240-chr6:134311947..134314798,2	MCF-7	breast:
6	chr6:134310840..134313274-chr6:134336686..134339271,2	K562	blood:
7	chr6:134293580..134296132-chr6:134309183..134311272,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TBPL1-3	chr6:134309210-134311566	NONHSAT115011

No data

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10872420	0.80[EUR][1000 genomes]
rs11154754	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs162191	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs162192	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs167876	0.90[AMR][1000 genomes]
rs2076583	1.00[ASW][hapmap];0.82[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2300197	0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs35776966	1.00[ASW][hapmap];0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3756877	1.00[ASW][hapmap];0.82[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3777892	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs459625	1.00[ASW][hapmap];0.82[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4896019	0.89[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.82[TSI][hapmap];0.83[ASN][1000 genomes]
rs6919121	0.80[TSI][hapmap]
rs9321424	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9373073	0.81[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs9375994	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs9385674	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs9389124	0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402553	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
2	chr6:134280600-134312200	Weak transcription	Lung	lung
3	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
6	chr6:134295000-134313800	Weak transcription	Spleen	Spleen
7	chr6:134295200-134311800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:134299400-134311800	Weak transcription	Gastric	stomach
10	chr6:134299400-134312000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:134299400-134313200	Weak transcription	Psoas Muscle	Psoas
12	chr6:134299400-134313400	Weak transcription	Aorta	Aorta
13	chr6:134299400-134313800	Weak transcription	Right Ventricle	heart
14	chr6:134299800-134312000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:134299800-134313600	Weak transcription	Fetal Heart	heart
16	chr6:134299800-134314000	Weak transcription	Fetal Brain Male	brain
17	chr6:134300400-134312200	Weak transcription	Small Intestine	intestine
18	chr6:134300400-134315400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:134300600-134312000	Weak transcription	NHLF	lung
20	chr6:134301000-134312400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:134303200-134312200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:134304400-134312000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:134304800-134311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:134304800-134311800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:134304800-134311800	Weak transcription	NHEK	skin
27	chr6:134304800-134312600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:134304800-134313800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:134304800-134314400	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:134304800-134315600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:134304800-134324000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:134305000-134311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:134305000-134311800	Weak transcription	Pancreas	Pancrea
35	chr6:134305000-134314000	Weak transcription	Brain Angular Gyrus	brain
36	chr6:134305000-134314000	Weak transcription	Brain Substantia Nigra	brain
37	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
38	chr6:134305200-134311800	Weak transcription	A549	lung
39	chr6:134305200-134312200	Weak transcription	Hela-S3	cervix
40	chr6:134306000-134312000	Weak transcription	HepG2	liver
41	chr6:134306000-134312200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:134306000-134324000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:134306000-134324000	Weak transcription	Brain Anterior Caudate	brain
44	chr6:134306200-134316000	Weak transcription	Fetal Intestine Large	intestine
45	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:134306400-134312400	Weak transcription	Colonic Mucosa	Colon
47	chr6:134306800-134312000	Strong transcription	Primary B cells from cord blood	blood
48	chr6:134306800-134314800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:134307400-134311200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:134307400-134311200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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