Variant report

Variant	rs9385674
Chromosome Location	chr6:134296101-134296102
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134293580..134296132-chr6:134309183..134311272,2	K562	blood:
2	chr6:134294288..134296842-chr6:134382969..134385826,3	K562	blood:
3	chr6:134293697..134297795-chr6:134300055..134303954,5	K562	blood:
4	chr6:134275524..134278363-chr6:134292927..134296382,4	K562	blood:
5	chr6:134294835..134297356-chr6:134301505..134303429,2	K562	blood:
6	chr6:134272705..134274666-chr6:134292169..134296187,3	MCF-7	breast:
7	chr6:134289722..134291671-chr6:134296099..134298094,2	K562	blood:
8	chr6:134294012..134296543-chr6:134396397..134398405,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11154754	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385066	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs162191	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs162192	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs167876	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2076583	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228867	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2300197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35776966	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3756877	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3777892	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs380825	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs459625	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6919121	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9321424	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375994	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389124	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9402553	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276200-134299000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:134276200-134303000	Weak transcription	HSMMtube	muscle
3	chr6:134276600-134302800	Weak transcription	Fetal Kidney	kidney
4	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
5	chr6:134278000-134303600	Weak transcription	Dnd41	blood
6	chr6:134279400-134298800	Weak transcription	Psoas Muscle	Psoas
7	chr6:134280400-134304200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:134280600-134312200	Weak transcription	Lung	lung
9	chr6:134281400-134298800	Weak transcription	Ovary	ovary
10	chr6:134282000-134298800	Weak transcription	Gastric	stomach
11	chr6:134282600-134302000	Weak transcription	Placenta	Placenta
12	chr6:134283200-134305600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:134286800-134299000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:134286800-134304200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:134288200-134298800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:134288400-134306600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:134288800-134299000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:134289200-134298800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:134289400-134298800	Weak transcription	Hela-S3	cervix
22	chr6:134289400-134298800	Weak transcription	NHEK	skin
23	chr6:134289400-134299400	Weak transcription	HUVEC	blood vessel
24	chr6:134289600-134299000	Weak transcription	HMEC	breast
25	chr6:134289800-134304200	Weak transcription	Fetal Stomach	stomach
26	chr6:134290000-134298800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:134290000-134299200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:134290000-134304200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:134290200-134302400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:134290800-134298800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
32	chr6:134291000-134299000	Weak transcription	Aorta	Aorta
33	chr6:134291200-134298800	Weak transcription	Brain Anterior Caudate	brain
34	chr6:134291200-134302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:134291600-134299200	Weak transcription	NHLF	lung
36	chr6:134291800-134304000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:134292400-134300600	Weak transcription	Primary B cells from cord blood	blood
38	chr6:134292600-134303000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:134292600-134304400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:134293400-134296800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:134293800-134299000	Weak transcription	HSMM	muscle
42	chr6:134293800-134299200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:134293800-134299800	Weak transcription	Fetal Lung	lung
44	chr6:134294000-134299000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:134294400-134296800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:134294400-134298800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:134294400-134299200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:134294400-134304200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:134294600-134296200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:134294600-134296200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links