Variant report
| Variant | rs9321871 |
|---|---|
| Chromosome Location | chr6:142811932-142811933 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1013902 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs12664078 | 0.81[EUR][1000 genomes] |
| rs1467720 | 0.93[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17071798 | 0.90[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2064314 | 0.84[EUR][1000 genomes] |
| rs2143390 | 0.83[EUR][1000 genomes] |
| rs2223616 | 0.81[EUR][1000 genomes] |
| rs2294765 | 0.88[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs2294768 | 0.88[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs2294770 | 0.85[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2294772 | 0.84[EUR][1000 genomes] |
| rs2294773 | 0.90[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs2294774 | 0.84[EUR][1000 genomes] |
| rs2328339 | 0.90[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34701089 | 0.97[EUR][1000 genomes] |
| rs41289839 | 0.83[EUR][1000 genomes] |
| rs4140531 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs6570512 | 0.81[EUR][1000 genomes] |
| rs6913116 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs7758750 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs7759268 | 0.86[EUR][1000 genomes] |
| rs9373343 | 0.88[CEU][hapmap] |
| rs9373345 | 0.83[EUR][1000 genomes] |
| rs9376689 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs9385994 | 0.90[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs9389988 | 0.83[EUR][1000 genomes] |
| rs9389990 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs9403384 | 0.90[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs9484645 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142811800-142812200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
