Variant report

Variant	rs9321890
Chromosome Location	chr6:143382866-143382867
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143382100..143384981-chr6:143387320..143388828,2	K562	blood:
2	chr6:143381342..143383522-chr6:143831139..143832827,2	K562	blood:
3	chr6:143379898..143383638-chr6:143483833..143489108,8	K562	blood:
4	chr6:143264696..143268807-chr6:143380557..143382998,8	MCF-7	breast:
5	chr6:143382426..143384220-chr6:143518377..143519949,2	K562	blood:
6	chr6:143380360..143383135-chr6:143419017..143422482,3	K562	blood:
7	chr6:143381113..143383323-chr6:143484337..143488491,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000146416	Chromatin interaction
ENSG00000225752	Chromatin interaction

rs_ID	r²[population]
rs9484698	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484699	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496508	0.86[AFR][1000 genomes]
rs9496509	0.86[AFR][1000 genomes]

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143380400-143383000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:143380600-143383200	Active TSS	Liver	Liver
3	chr6:143380800-143383000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:143380800-143383000	Active TSS	Rectal Smooth Muscle	rectum
5	chr6:143381200-143383000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:143381200-143383000	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:143381200-143383000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:143381200-143383000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:143381200-143383000	Active TSS	Brain Hippocampus Middle	brain
10	chr6:143381200-143383600	Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:143381400-143383000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:143382000-143383000	Flanking Active TSS	Dnd41	blood
13	chr6:143382200-143383000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr6:143382200-143383000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr6:143382200-143383000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:143382200-143383000	Flanking Active TSS	Fetal Brain Male	brain
17	chr6:143382200-143383200	Flanking Active TSS	GM12878-XiMat	blood
18	chr6:143382200-143383400	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr6:143382200-143383600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:143382400-143383000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:143382400-143383000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:143382400-143383000	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr6:143382400-143383000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:143382400-143383000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:143382400-143383000	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr6:143382400-143383000	Flanking Active TSS	HSMMtube	muscle
27	chr6:143382400-143383200	Weak transcription	Small Intestine	intestine
28	chr6:143382400-143383200	Flanking Active TSS	NHEK	skin
29	chr6:143382400-143383600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr6:143382400-143383600	Flanking Active TSS	HMEC	breast
31	chr6:143382600-143383000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr6:143382600-143383000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:143382600-143383000	Flanking Active TSS	Fetal Brain Female	brain
34	chr6:143382600-143383000	Flanking Active TSS	Fetal Kidney	kidney
35	chr6:143382600-143383000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:143382600-143383200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr6:143382600-143383200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:143382600-143383200	Enhancers	Primary B cells from peripheral blood	blood
39	chr6:143382600-143383200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:143382600-143383200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:143382600-143383400	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr6:143382600-143383600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr6:143382600-143383600	Weak transcription	Psoas Muscle	Psoas
44	chr6:143382600-143383800	Flanking Active TSS	HepG2	liver
45	chr6:143382600-143384000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr6:143382600-143385400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:143382600-143386200	Weak transcription	Pancreas	Pancrea
48	chr6:143382600-143389200	Weak transcription	Aorta	Aorta
49	chr6:143382600-143426800	Weak transcription	Ovary	ovary
50	chr6:143382800-143383000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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