Variant report

Variant	rs9484699
Chromosome Location	chr6:143383740-143383741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143382100..143384981-chr6:143387320..143388828,2	K562	blood:
2	chr6:143382426..143384220-chr6:143518377..143519949,2	K562	blood:

rs_ID	r²[population]
rs6937139	0.88[YRI][hapmap]
rs9321890	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484698	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496508	0.86[AFR][1000 genomes]
rs9496509	0.85[YRI][hapmap];0.86[AFR][1000 genomes]

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143383800	Flanking Active TSS	HepG2	liver
2	chr6:143382600-143384000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr6:143382600-143385400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:143382600-143386200	Weak transcription	Pancreas	Pancrea
5	chr6:143382600-143389200	Weak transcription	Aorta	Aorta
6	chr6:143382600-143426800	Weak transcription	Ovary	ovary
7	chr6:143382800-143383800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:143382800-143383800	Enhancers	Brain Substantia Nigra	brain
9	chr6:143382800-143383800	Weak transcription	Spleen	Spleen
10	chr6:143382800-143384000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:143382800-143384200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:143382800-143384200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:143382800-143384200	Enhancers	Adipose Nuclei	Adipose
14	chr6:143382800-143384200	Enhancers	Fetal Heart	heart
15	chr6:143382800-143384400	Flanking Active TSS	K562	blood
16	chr6:143382800-143384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:143382800-143384800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:143382800-143385400	Weak transcription	Left Ventricle	heart
19	chr6:143382800-143386000	Enhancers	HSMM	muscle
20	chr6:143382800-143389000	Weak transcription	NH-A	brain
21	chr6:143382800-143394800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:143383000-143383800	Enhancers	Brain Hippocampus Middle	brain
23	chr6:143383000-143383800	Enhancers	Fetal Kidney	kidney
24	chr6:143383000-143383800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr6:143383000-143383800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:143383000-143384000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:143383000-143384000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:143383000-143384200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:143383000-143384400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr6:143383000-143384400	Enhancers	HSMMtube	muscle
31	chr6:143383000-143384800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:143383000-143385400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:143383000-143385400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:143383000-143385800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:143383000-143386000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:143383000-143386000	Weak transcription	Osteobl	bone
37	chr6:143383200-143383800	Enhancers	Small Intestine	intestine
38	chr6:143383200-143383800	Enhancers	GM12878-XiMat	blood
39	chr6:143383200-143383800	Enhancers	NHEK	skin
40	chr6:143383200-143384000	Weak transcription	Fetal Brain Male	brain
41	chr6:143383200-143384200	Flanking Active TSS	Liver	Liver
42	chr6:143383200-143385000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:143383200-143385400	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:143383200-143385600	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr6:143383200-143386000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:143383200-143386600	Enhancers	Fetal Intestine Large	intestine
47	chr6:143383200-143386800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:143383400-143383800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr6:143383400-143384000	Weak transcription	Right Ventricle	heart
50	chr6:143383400-143384000	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links