Variant report

Variant	rs9323415
Chromosome Location	chr14:62998964-62998965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10131260	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10131556	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10131643	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10134023	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10143716	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10146413	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11847577	0.87[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[YRI][hapmap]
rs11851452	0.95[CHB][hapmap];0.80[YRI][hapmap]
rs1489864	0.95[CHB][hapmap]
rs1844454	0.94[CHB][hapmap];0.88[YRI][hapmap]
rs2171832	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60450551	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61993924	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8014365	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043508	chr14:62750671-63150403	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1037232	chr14:62758045-63116423	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv949518	chr14:62777098-63123208	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9323415	ZBTB25	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:62998600-62999000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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