Variant report
| Variant | rs1489864 |
|---|---|
| Chromosome Location | chr14:62986106-62986107 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10131260 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10131556 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10131643 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10134023 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10138562 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10143716 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10146413 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11847577 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs11851452 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs1387672 | 0.97[ASN][1000 genomes] |
| rs1489861 | 0.97[ASN][1000 genomes] |
| rs1844454 | 1.00[CHB][hapmap];0.84[JPT][hapmap] |
| rs2000250 | 0.84[JPT][hapmap] |
| rs2171832 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2883560 | 0.90[JPT][hapmap] |
| rs60114110 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60450551 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs60979554 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61993924 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7156869 | 0.96[ASN][1000 genomes] |
| rs8014365 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043508 | chr14:62750671-63150403 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037232 | chr14:62758045-63116423 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv949518 | chr14:62777098-63123208 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
