Variant report

Variant	rs9323434
Chromosome Location	chr14:63707649-63707650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10148219	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs10150375	0.85[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs10162301	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs11847980	0.84[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17093475	0.84[CEU][hapmap]
rs17100865	0.84[CEU][hapmap];0.82[CHD][hapmap]
rs17100876	0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs17765231	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17765297	0.84[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17765362	0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955670	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs2146941	0.91[CEU][hapmap]
rs2356159	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28696286	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57466787	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57700441	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58576344	0.84[EUR][1000 genomes]
rs67162923	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67212716	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67551358	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67785117	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67867117	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7158866	0.85[EUR][1000 genomes]
rs72712555	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72712563	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72712564	0.84[EUR][1000 genomes]
rs761549	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8012663	0.84[EUR][1000 genomes]
rs8013013	0.88[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63672000-63717000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:63676400-63733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:63679400-63717000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:63691200-63716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:63691400-63712800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr14:63691600-63712400	Weak transcription	Ovary	ovary
7	chr14:63697000-63712600	Weak transcription	NH-A	brain
8	chr14:63697400-63712400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:63699600-63707800	Weak transcription	Left Ventricle	heart
10	chr14:63699600-63716600	Weak transcription	Fetal Lung	lung
11	chr14:63700200-63714800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:63700600-63732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:63702000-63715200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:63703400-63716000	Weak transcription	Psoas Muscle	Psoas
15	chr14:63704600-63709400	Strong transcription	HUVEC	blood vessel
16	chr14:63706000-63708200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:63706200-63708600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:63706200-63712200	Weak transcription	Fetal Stomach	stomach
19	chr14:63706400-63713400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:63706800-63707800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:63707000-63708000	Enhancers	Rectal Smooth Muscle	rectum
22	chr14:63707200-63708400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:63707200-63715400	Weak transcription	Right Atrium	heart
24	chr14:63707600-63708000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:63707600-63708200	Enhancers	Aorta	Aorta
26	chr14:63707600-63708400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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