Variant report

Variant	rs10150375
Chromosome Location	chr14:63691272-63691273
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11625202	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11847980	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs12893195	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17093475	0.91[CEU][hapmap]
rs17100865	0.91[CEU][hapmap];1.00[MEX][hapmap]
rs17100876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17765231	0.91[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs17765297	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs17765362	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs2031231	0.90[ASN][1000 genomes]
rs2146941	0.91[CEU][hapmap]
rs2356159	0.93[EUR][1000 genomes]
rs28696286	0.89[EUR][1000 genomes]
rs4902216	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs55892114	0.81[EUR][1000 genomes]
rs57466787	0.97[EUR][1000 genomes]
rs57700441	0.93[EUR][1000 genomes]
rs58576344	0.90[EUR][1000 genomes]
rs67162923	0.98[EUR][1000 genomes]
rs67212716	0.97[EUR][1000 genomes]
rs67551358	0.98[EUR][1000 genomes]
rs67785117	0.97[EUR][1000 genomes]
rs67867117	0.98[EUR][1000 genomes]
rs7146450	0.83[CEU][hapmap]
rs7158866	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72712555	0.98[EUR][1000 genomes]
rs72712563	0.90[EUR][1000 genomes]
rs72712564	0.90[EUR][1000 genomes]
rs761549	0.98[EUR][1000 genomes]
rs8012663	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323434	0.85[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63672000-63717000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:63676200-63707600	Weak transcription	Aorta	Aorta
3	chr14:63676400-63733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:63679400-63717000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:63681600-63694600	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:63688600-63696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:63689600-63691600	Enhancers	NH-A	brain
8	chr14:63690000-63691600	Enhancers	Fetal Heart	heart
9	chr14:63690000-63691800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:63690400-63691600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:63690400-63692400	Weak transcription	HUVEC	blood vessel
12	chr14:63690600-63691600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:63690600-63691600	Enhancers	Fetal Lung	lung
14	chr14:63690800-63691400	Enhancers	Fetal Brain Female	brain
15	chr14:63690800-63691600	Enhancers	Fetal Stomach	stomach
16	chr14:63691000-63691400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:63691000-63691400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr14:63691000-63691400	Enhancers	Brain Germinal Matrix	brain
19	chr14:63691000-63691400	Enhancers	Rectal Smooth Muscle	rectum
20	chr14:63691000-63691600	Enhancers	Ovary	ovary
21	chr14:63691200-63691400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr14:63691200-63691400	Enhancers	Fetal Brain Male	brain
23	chr14:63691200-63692200	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:63691200-63694600	Weak transcription	Left Ventricle	heart
25	chr14:63691200-63695000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:63691200-63716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links