Variant report

Variant	rs11625202
Chromosome Location	chr14:63686619-63686620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10150375	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12893195	0.89[ASN][1000 genomes]
rs17100876	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17765231	0.89[EUR][1000 genomes]
rs17765297	0.84[EUR][1000 genomes]
rs17765362	0.81[EUR][1000 genomes]
rs2031231	0.82[ASN][1000 genomes]
rs2356159	0.84[EUR][1000 genomes]
rs4902216	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs57466787	0.88[EUR][1000 genomes]
rs57700441	0.84[EUR][1000 genomes]
rs58576344	0.81[EUR][1000 genomes]
rs67162923	0.89[EUR][1000 genomes]
rs67212716	0.88[EUR][1000 genomes]
rs67551358	0.89[EUR][1000 genomes]
rs67785117	0.88[EUR][1000 genomes]
rs67867117	0.89[EUR][1000 genomes]
rs7158866	0.89[EUR][1000 genomes]
rs72712555	0.89[EUR][1000 genomes]
rs72712563	0.81[EUR][1000 genomes]
rs72712564	0.81[EUR][1000 genomes]
rs761549	0.89[EUR][1000 genomes]
rs8012663	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv977586	chr14:63682790-63686865	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63672000-63717000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:63673400-63691000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:63673600-63689800	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:63676200-63707600	Weak transcription	Aorta	Aorta
5	chr14:63676400-63733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:63679400-63717000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:63680000-63689600	Weak transcription	NH-A	brain
8	chr14:63680600-63689800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:63680600-63690600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:63680800-63687800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:63681000-63687800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:63681600-63690800	Weak transcription	Fetal Stomach	stomach
13	chr14:63681600-63691000	Weak transcription	Left Ventricle	heart
14	chr14:63681600-63691000	Weak transcription	Psoas Muscle	Psoas
15	chr14:63681600-63694600	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:63682200-63690400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:63682200-63690600	Weak transcription	Fetal Lung	lung
18	chr14:63684000-63688400	Strong transcription	HUVEC	blood vessel
19	chr14:63686000-63687400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:63686200-63687800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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