Variant report

Variant	rs12893195
Chromosome Location	chr15:70665753-70665754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10150375	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625202	0.89[ASN][1000 genomes]
rs17100876	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17765231	0.85[EUR][1000 genomes]
rs17765297	0.81[EUR][1000 genomes]
rs2031231	0.89[ASN][1000 genomes]
rs2356159	0.81[EUR][1000 genomes]
rs4902216	0.90[ASN][1000 genomes]
rs57466787	0.84[EUR][1000 genomes]
rs57700441	0.81[EUR][1000 genomes]
rs67162923	0.85[EUR][1000 genomes]
rs67212716	0.84[EUR][1000 genomes]
rs67551358	0.85[EUR][1000 genomes]
rs67785117	0.84[EUR][1000 genomes]
rs67867117	0.85[EUR][1000 genomes]
rs7158866	0.85[EUR][1000 genomes]
rs72712555	0.85[EUR][1000 genomes]
rs761549	0.85[EUR][1000 genomes]
rs8012663	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055069	chr15:70356034-70869004	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv428306	chr15:70464507-70687451	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1035167	chr15:70519381-70748796	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv542425	chr15:70519381-70748796	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:70660800-70666400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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