Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10138394	1.00[YRI][hapmap]
rs10162521	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10873331	0.82[AFR][1000 genomes]
rs1530767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1530770	0.86[YRI][hapmap]
rs1530771	0.91[LWK][hapmap];0.96[YRI][hapmap]
rs2122424	0.88[YRI][hapmap]
rs2122425	0.91[LWK][hapmap];0.88[YRI][hapmap]
rs2122426	0.91[LWK][hapmap];1.00[YRI][hapmap]
rs2371331	0.91[LWK][hapmap];1.00[YRI][hapmap]
rs4903928	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs4903929	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs6574586	0.91[LWK][hapmap];0.96[YRI][hapmap]
rs6574588	0.96[YRI][hapmap]
rs7492330	0.91[LWK][hapmap];1.00[YRI][hapmap]
rs8004110	0.92[YRI][hapmap]
rs8009045	0.88[YRI][hapmap]
rs8011469	0.88[YRI][hapmap]
rs8013422	1.00[YRI][hapmap]
rs8016670	1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[AMR][1000 genomes]
rs8017669	0.92[YRI][hapmap]
rs8018254	1.00[CHD][hapmap]
rs8018892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9323690	BTNL9	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81083600-81088200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:81086000-81088200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:81086600-81088400	Enhancers	A549	lung
5	chr14:81086600-81088600	Enhancers	Hela-S3	cervix
6	chr14:81087000-81087400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:81087000-81087600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:81087000-81088600	Enhancers	NHDF-Ad	bronchial

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