Variant report

Variant	rs8018254
Chromosome Location	chr14:81010253-81010254
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10138951	0.85[GIH][hapmap];0.87[LWK][hapmap];0.83[AFR][1000 genomes]
rs10141015	1.00[CHB][hapmap]
rs1072857	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621918	0.87[EUR][1000 genomes]
rs11847660	1.00[CHB][hapmap]
rs17110868	0.85[GIH][hapmap]
rs6574591	0.85[GIH][hapmap]
rs7155869	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157244	0.85[GIH][hapmap]
rs8008286	0.85[GIH][hapmap];0.84[LWK][hapmap];0.82[AFR][1000 genomes]
rs8008763	0.85[YRI][hapmap]
rs9323687	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323690	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81003400-81015600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:81009000-81012600	Weak transcription	Dnd41	blood
3	chr14:81009600-81010400	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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