Variant report

Variant	rs10141015
Chromosome Location	chr14:81001978-81001979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10138951	0.88[CEU][hapmap]
rs1072857	1.00[CHB][hapmap]
rs11847660	1.00[CHB][hapmap]
rs7157244	0.88[CEU][hapmap]
rs8008286	0.88[CEU][hapmap]
rs8018254	1.00[CHB][hapmap]
rs9323687	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv69330	chr14:81001977-81001978	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
2	chr14:80978600-81006600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:80982800-81002800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:80990800-81002800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:80997800-81005400	Weak transcription	Dnd41	blood
6	chr14:81001600-81002000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:81001600-81002000	Enhancers	Fetal Lung	lung
8	chr14:81001600-81002400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:81001600-81002400	Enhancers	Fetal Kidney	kidney
10	chr14:81001800-81002400	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links