Variant report

Variant	rs8008286
Chromosome Location	chr14:81033179-81033180
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10138951	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141015	0.88[CEU][hapmap]
rs11620910	1.00[CEU][hapmap]
rs11623496	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11624616	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12323598	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17110868	0.89[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap]
rs57759210	0.81[EUR][1000 genomes]
rs61391568	0.81[EUR][1000 genomes]
rs6574591	0.89[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs7155869	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7156847	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7157244	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs7159335	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs8008763	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8014976	0.83[EUR][1000 genomes]
rs8016841	0.88[CEU][hapmap]
rs8017020	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs8018254	0.85[GIH][hapmap];0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81028400-81033400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81029600-81044800	Weak transcription	Dnd41	blood
3	chr14:81032000-81033400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:81032000-81034000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:81032200-81034400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:81032400-81040400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:81033000-81034200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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