Variant report

Variant	rs17110868
Chromosome Location	chr14:81087649-81087650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10138951	0.89[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap]
rs10139152	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10149999	0.83[ASN][1000 genomes]
rs10151794	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10498550	1.00[JPT][hapmap]
rs11620910	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs11624616	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs12323598	0.91[EUR][1000 genomes]
rs12586869	1.00[JPT][hapmap]
rs12588767	1.00[JPT][hapmap]
rs17111040	1.00[JPT][hapmap]
rs17111069	1.00[JPT][hapmap]
rs2371415	1.00[JPT][hapmap]
rs55859597	0.83[ASN][1000 genomes]
rs55910446	0.80[EUR][1000 genomes]
rs57289554	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57315708	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57759210	0.91[EUR][1000 genomes]
rs61391568	0.91[EUR][1000 genomes]
rs6574591	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7151041	1.00[ASN][1000 genomes]
rs7156847	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs7157244	0.89[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs7159335	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs73328690	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73330519	0.83[ASN][1000 genomes]
rs73330520	0.83[ASN][1000 genomes]
rs74066058	1.00[ASN][1000 genomes]
rs8008286	0.89[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap]
rs8008763	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs8014976	0.96[EUR][1000 genomes]
rs8016670	1.00[JPT][hapmap]
rs8016841	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017020	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs8018254	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81083600-81088200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:81086000-81088200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:81086600-81088400	Enhancers	A549	lung
5	chr14:81086600-81088600	Enhancers	Hela-S3	cervix
6	chr14:81087000-81088600	Enhancers	NHDF-Ad	bronchial
7	chr14:81087400-81104200	Weak transcription	HSMM	muscle

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