Variant report

Variant	rs10151794
Chromosome Location	chr14:81111651-81111652
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10139152	1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149999	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498550	1.00[JPT][hapmap]
rs12586869	1.00[JPT][hapmap]
rs17110868	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17111040	1.00[JPT][hapmap]
rs17111069	1.00[JPT][hapmap]
rs2371415	1.00[JPT][hapmap]
rs55859597	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57315708	0.83[ASN][1000 genomes]
rs7151041	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73328690	0.83[ASN][1000 genomes]
rs73330519	1.00[ASN][1000 genomes]
rs73330520	1.00[ASN][1000 genomes]
rs74066058	0.83[ASN][1000 genomes]
rs8016670	1.00[JPT][hapmap]
rs8016841	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81105400-81112800	Weak transcription	HSMM	muscle
2	chr14:81105800-81112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:81106200-81112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:81106200-81135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81107000-81112200	Weak transcription	A549	lung
6	chr14:81108200-81145800	Weak transcription	Fetal Thymus	thymus
7	chr14:81108600-81116800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:81110400-81112200	Enhancers	HUVEC	blood vessel
9	chr14:81110600-81124600	Weak transcription	Dnd41	blood
10	chr14:81110800-81112400	Weak transcription	Thymus	Thymus
11	chr14:81110800-81124400	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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