Variant report

Variant	rs57289554
Chromosome Location	chr14:81093702-81093703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11620910	0.92[EUR][1000 genomes]
rs11624616	0.96[EUR][1000 genomes]
rs12323598	0.90[EUR][1000 genomes]
rs17110868	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55910446	0.87[EUR][1000 genomes]
rs57315708	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57759210	0.90[EUR][1000 genomes]
rs61391568	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6574591	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7156847	0.96[EUR][1000 genomes]
rs7157244	0.96[EUR][1000 genomes]
rs7159335	0.96[EUR][1000 genomes]
rs73328690	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8008763	0.94[EUR][1000 genomes]
rs8014976	0.96[EUR][1000 genomes]
rs8016841	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8017020	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81088600-81094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:81088600-81099400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81093200-81093800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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