Variant report

Variant	rs55910446
Chromosome Location	chr14:81100335-81100336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11620910	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11624616	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17110868	0.80[EUR][1000 genomes]
rs57289554	0.87[EUR][1000 genomes]
rs57315708	0.84[EUR][1000 genomes]
rs6574591	0.84[EUR][1000 genomes]
rs7156847	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7157244	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7159335	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8008763	0.82[EUR][1000 genomes]
rs8014976	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8016841	0.80[EUR][1000 genomes]
rs8017020	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81099000-81106200	Weak transcription	Psoas Muscle	Psoas
4	chr14:81099000-81109600	Weak transcription	Thymus	Thymus
5	chr14:81099400-81100600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:81099800-81100400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:81100200-81100600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:81100200-81100800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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