Variant report

Variant	rs61391568
Chromosome Location	chr14:81074518-81074519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10138951	0.81[EUR][1000 genomes]
rs11620910	0.91[EUR][1000 genomes]
rs11624616	0.94[EUR][1000 genomes]
rs12323598	1.00[EUR][1000 genomes]
rs17110868	0.91[EUR][1000 genomes]
rs57289554	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57315708	0.87[EUR][1000 genomes]
rs57759210	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6574591	0.94[EUR][1000 genomes]
rs7156847	0.94[EUR][1000 genomes]
rs7157244	0.94[EUR][1000 genomes]
rs7159335	0.94[EUR][1000 genomes]
rs73328690	0.87[EUR][1000 genomes]
rs8008286	0.81[EUR][1000 genomes]
rs8008763	0.96[EUR][1000 genomes]
rs8014976	0.94[EUR][1000 genomes]
rs8016841	0.91[EUR][1000 genomes]
rs8017020	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81062200-81082200	Weak transcription	Dnd41	blood
2	chr14:81072200-81075800	Weak transcription	Ovary	ovary
3	chr14:81072200-81075800	Weak transcription	NHLF	lung
4	chr14:81072600-81074800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:81073000-81075200	Weak transcription	A549	lung
6	chr14:81073200-81074800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:81073400-81075800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:81073800-81076000	Enhancers	Stomach Mucosa	stomach
9	chr14:81074200-81075200	Enhancers	Pancreas	Pancrea
10	chr14:81074200-81076000	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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