Variant report

Variant	rs11847660
Chromosome Location	chr14:81005532-81005533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10138431	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140845	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10141015	1.00[CHB][hapmap]
rs10148083	0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10498544	0.91[ASN][1000 genomes]
rs1072857	1.00[CHB][hapmap]
rs12886241	0.95[ASN][1000 genomes]
rs2290168	0.93[ASN][1000 genomes]
rs35817733	0.98[ASN][1000 genomes]
rs7160604	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8005242	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8018254	1.00[CHB][hapmap]
rs9323687	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80978600-81006600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:81002000-81010000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:81002400-81009600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:81003400-81015600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:81004600-81005800	Flanking Active TSS	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links