Variant report

Variant	rs9327463
Chromosome Location	chr5:127315137-127315138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127302540..127306473-chr5:127313949..127316469,3	MCF-7	breast:
2	chr5:127314714..127316450-chr5:127319239..127321157,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10050374	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057561	1.00[ASN][1000 genomes]
rs10064559	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068883	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213776	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900794	0.81[CEU][hapmap]
rs11738398	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs12517005	0.82[CEU][hapmap]
rs13160751	0.81[EUR][1000 genomes]
rs17164458	0.89[AFR][1000 genomes]
rs2011576	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2409037	0.82[CEU][hapmap]
rs4836344	1.00[ASN][1000 genomes]
rs4836346	0.81[EUR][1000 genomes]
rs4836348	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595796	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871743	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889756	0.88[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs758181	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706518	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7717741	0.88[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs7726011	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9327463	SLC27A6	cis	parietal	SCAN
rs9327463	SLC12A2	cis	multi-tissue	Pritchard
rs9327463	SLC12A2	cis	cerebellum	SCAN
rs9327463	CDC42SE2	cis	cerebellum	SCAN
rs9327463	LOC644869	cis	multi-tissue	Pritchard
rs9327463	HINT1	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127290600-127332000	Weak transcription	Aorta	Aorta
2	chr5:127295800-127322800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:127296200-127322600	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:127297600-127332000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:127297800-127323200	Weak transcription	Gastric	stomach
6	chr5:127297800-127323600	Weak transcription	HSMMtube	muscle
7	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:127302400-127321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:127302400-127323400	Weak transcription	Fetal Stomach	stomach
10	chr5:127302600-127322800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:127304000-127333400	Weak transcription	Primary T cells from cord blood	blood
12	chr5:127304200-127316000	Weak transcription	A549	lung
13	chr5:127306600-127333200	Weak transcription	Psoas Muscle	Psoas
14	chr5:127306800-127318400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:127306800-127323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:127306800-127323200	Weak transcription	Left Ventricle	heart
17	chr5:127306800-127323200	Weak transcription	NHEK	skin
18	chr5:127312800-127318000	Enhancers	Stomach Mucosa	stomach
19	chr5:127312800-127323200	Weak transcription	NHLF	lung
20	chr5:127313400-127317200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr5:127314400-127315400	Enhancers	Duodenum Mucosa	Duodenum
22	chr5:127314400-127315600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr5:127314400-127315600	Enhancers	Fetal Intestine Small	intestine
24	chr5:127314400-127315600	Enhancers	HepG2	liver
25	chr5:127314400-127316400	Enhancers	Pancreas	Pancrea
26	chr5:127315000-127315400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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