Variant report

Variant	rs9328245
Chromosome Location	chr6:4352643-4352644
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4342872..4345232-chr6:4351018..4352663,2	MCF-7	breast:
2	chr6:4351209..4353665-chr6:4356006..4358889,4	MCF-7	breast:
3	chr6:4340786..4343119-chr6:4351135..4354014,2	K562	blood:
4	chr6:4352359..4354263-chr6:4776426..4779094,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11962355	0.86[EUR][1000 genomes]
rs12182970	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55715993	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73717306	0.90[EUR][1000 genomes]
rs73717307	0.90[EUR][1000 genomes]
rs73717309	0.86[EUR][1000 genomes]
rs73717499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9328247	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9502167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9502168	0.90[EUR][1000 genomes]
rs9502169	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9502170	0.86[EUR][1000 genomes]
rs9502172	0.86[EUR][1000 genomes]
rs9504054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504057	1.00[EUR][1000 genomes]
rs9504058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504059	0.81[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504060	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9504064	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv600861	chr6:4238488-4469641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv462618	chr6:4238488-4472587	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv600862	chr6:4238488-4472587	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv949364	chr6:4253413-4466981	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv600863	chr6:4255387-4472587	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1027498	chr6:4255640-4471635	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv2763995	chr6:4255640-4474114	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1020205	chr6:4255640-4474114	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv600864	chr6:4255708-4464630	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv516402	chr6:4255708-4472587	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv462619	chr6:4255708-4472587	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv600865	chr6:4255708-4472587	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv462620	chr6:4255708-4481421	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv600866	chr6:4255708-4481421	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv600867	chr6:4255725-4464630	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv462621	chr6:4255725-4472587	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	nsv600868	chr6:4255725-4472587	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	nsv1029501	chr6:4255745-4471635	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv432845	chr6:4255905-4471472	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
21	nsv1030655	chr6:4257190-4473701	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
22	nsv538108	chr6:4257190-4473701	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv1030840	chr6:4257390-4473562	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv538109	chr6:4257390-4473562	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv1026890	chr6:4259075-4471635	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
26	nsv1030588	chr6:4264933-4455210	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
27	nsv1021257	chr6:4264933-4473384	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
28	nsv538110	chr6:4264933-4473384	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
29	nsv916553	chr6:4269714-4437920	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
30	nsv1016621	chr6:4277411-4473384	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
31	nsv600869	chr6:4294450-4430623	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
32	nsv883412	chr6:4349808-4376376	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4345800-4353600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:4347400-4358600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:4350200-4352800	Enhancers	HUVEC	blood vessel
4	chr6:4350200-4353200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:4350400-4352800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:4350400-4353600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:4350600-4353200	Enhancers	Fetal Stomach	stomach
8	chr6:4350600-4353400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:4350600-4358800	Weak transcription	Spleen	Spleen
10	chr6:4350800-4353000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:4351000-4357400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:4351400-4352800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:4351400-4352800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:4351400-4353000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:4351600-4353000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:4351600-4353600	Enhancers	Fetal Heart	heart
17	chr6:4351600-4353600	Enhancers	Lung	lung
18	chr6:4351800-4352800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:4351800-4352800	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:4351800-4352800	Enhancers	Fetal Lung	lung
21	chr6:4351800-4352800	Flanking Active TSS	Osteobl	bone
22	chr6:4351800-4353000	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr6:4351800-4353000	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr6:4351800-4353000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:4351800-4353000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr6:4351800-4353000	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr6:4351800-4353000	Flanking Active TSS	A549	lung
28	chr6:4351800-4353200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr6:4351800-4353200	Flanking Active TSS	Hela-S3	cervix
30	chr6:4351800-4354600	Enhancers	Esophagus	oesophagus
31	chr6:4352000-4352800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:4352000-4352800	Active TSS	Brain Anterior Caudate	brain
33	chr6:4352000-4352800	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr6:4352000-4352800	Active TSS	Rectal Smooth Muscle	rectum
35	chr6:4352000-4353000	Active TSS	Brain Cingulate Gyrus	brain
36	chr6:4352200-4352800	Active TSS	Colonic Mucosa	Colon
37	chr6:4352200-4353200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:4352200-4353400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:4352200-4358800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:4352400-4352800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:4352400-4352800	Flanking Active TSS	HSMMtube	muscle
42	chr6:4352400-4353000	Enhancers	Psoas Muscle	Psoas
43	chr6:4352400-4355400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:4352600-4352800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:4352600-4352800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:4352600-4352800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:4352600-4352800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:4352600-4352800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr6:4352600-4352800	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr6:4352600-4352800	Weak transcription	Gastric	stomach

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