Variant report

Variant	rs9332098
Chromosome Location	chr10:96697459-96697460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:96697196-96697461	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:96697436-96697486	SAEC	small airway:	n/a
2	chr10:96697436-96697486	RPTEC	kidney:	n/a
3	chr10:96697436-96697486	ECC-1	luminal epithelium:	n/a
4	chr10:96697436-96697486	NB4	blood:	n/a
5	chr10:96697436-96697486	CMK	blood:	n/a
6	chr10:96697436-96697486	HUVEC	blood vessel:	n/a
7	chr10:96697436-96697486	BJ	skin:	n/a
8	chr10:96697436-96697486	MCF-7	breast:	n/a
9	chr10:96697436-96697486	PANC-1	pancreas:	n/a
10	chr10:96697436-96697486	HCF	heart:	n/a
11	chr10:96697436-96697486	HRCEpiC	kidney:	n/a
12	chr10:96697436-96697486	Jurkat	blood:	n/a
13	chr10:96697436-96697486	AG09309	skin:	n/a
14	chr10:96697436-96697486	HCPEpiC	choroid plexus:	n/a
15	chr10:96697436-96697486	HEK293	kidney:	embryo
16	chr10:96697436-96697486	HAEpiC	amniotic membrane:	n/a
17	chr10:96697436-96697486	H1-hESC	embryonic stem cell:	embryo
18	chr10:96697436-96697486	NH-A	brain:	n/a
19	chr10:96697436-96697486	Caco-2	colon:	n/a
20	chr10:96697436-96697486	HRPEpiC	eye:	n/a
21	chr10:96697436-96697486	HepG2	liver:	n/a
22	chr10:96697436-96697486	SK-N-MC	brain:	n/a
23	chr10:96697436-96697486	AoSMC	blood vessel:	n/a
24	chr10:96697436-96697486	NT2-D1	testis:	n/a
25	chr10:96697436-96697486	GM19239	blood:	n/a
26	chr10:96697436-96697486	AG04450	lung:	fetal
27	chr10:96697436-96697486	HIPEpiC	eye:	n/a
28	chr10:96697436-96697486	T-47D	breast:	n/a
29	chr10:96697436-96697486	AG04449	skin:	fetal
30	chr10:96697436-96697486	SK-N-SH_RA	brain:	n/a
31	chr10:96697436-96697486	AG10803	skin:	n/a
32	chr10:96697436-96697486	HL-60	blood:	n/a
33	chr10:96697436-96697486	NHDF-neo	bronchial:	n/a
34	chr10:96697436-96697486	A549	lung:	n/a
35	chr10:96697436-96697486	BE2_C	brain:	n/a
36	chr10:96697436-96697486	GM12891	blood:	n/a
37	chr10:96697436-96697486	U87	brain:	n/a
38	chr10:96697436-96697486	HCT-116	colon:	n/a
39	chr10:96697436-96697486	PrEC	prostate:	n/a
40	chr10:96697436-96697486	GM12892	blood:	n/a
41	chr10:96697436-96697486	HCM	heart:	n/a
42	chr10:96697436-96697486	HEEpiC	esophagus:	n/a
43	chr10:96697436-96697486	HRE	kidney:	n/a
44	chr10:96697436-96697486	PFSK-1	brain:	n/a
45	chr10:96697436-96697486	GM06990	blood:	n/a
46	chr10:96697436-96697486	NHBE	bronchial:	n/a
47	chr10:96697436-96697486	AG09319	gingival:	n/a
48	chr10:96697436-96697486	Hela-S3	cervix:	n/a
49	chr10:96697436-96697486	MCF10A-Er-Src	breast:	n/a
50	chr10:96697436-96697486	ovcar-3	ovarian:	n/a

No data

Variant related genes	Relation type
CYP2C9	TF binding region
CYP2C9	CpG island

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10509677	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509678	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509680	1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1057910	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057911	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1581735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110288	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17110310	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17110314	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17110317	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17110321	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17878382	1.00[CEU][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17878627	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17878673	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17879992	0.86[EUR][1000 genomes]
rs17884832	0.86[EUR][1000 genomes]
rs17885052	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17885348	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1853207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2093433	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28371676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28371682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399511	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2901822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3758581	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3862008	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3862009	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4304697	0.95[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs55732648	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55748010	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55805503	0.86[EUR][1000 genomes]
rs57079861	0.82[EUR][1000 genomes]
rs57584668	0.82[EUR][1000 genomes]
rs57822910	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57957726	0.82[EUR][1000 genomes]
rs60214908	0.82[EUR][1000 genomes]
rs60378628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61153799	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61249521	0.80[EUR][1000 genomes]
rs61604699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076898	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7077029	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7088784	0.95[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs733115	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74150717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74152369	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74154112	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74154119	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74154124	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7901123	0.84[EUR][1000 genomes]
rs7910609	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7915727	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9325473	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332092	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332093	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332108	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332137	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332141	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332147	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332157	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332160	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332169	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332175	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332183	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332187	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332188	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332217	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332227	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332230	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332238	1.00[JPT][hapmap]
rs9332245	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663112	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9663214	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3529538	chr10:96522848-96700018	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3529539	chr10:96522848-96700018	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3361914	chr10:96522865-96700024	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3336672	chr10:96543010-96711519	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1037973	chr10:96563228-96711744	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1047782	chr10:96581094-96718479	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv551962	chr10:96680265-96734339	Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9332098	C10orf129	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96697400-96698000	Enhancers	Liver	Liver
2	chr10:96697400-96699600	Weak transcription	Fetal Intestine Small	intestine

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