Variant report
Variant | rs28399511 |
---|---|
Chromosome Location | chr10:96580140-96580141 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10509677 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10509678 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10509680 | 0.84[EUR][1000 genomes] |
rs1057910 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1057911 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11568732 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1358894 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1409649 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1409650 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1409651 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1409652 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1581735 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs17110192 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17110194 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17110236 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17110288 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs17110310 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17110314 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17110317 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17110321 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17878382 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17878627 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17878673 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17879263 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17879992 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17884832 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17885052 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs17885348 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1853207 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2093433 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs28371676 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs28371682 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2901822 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs3740367 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs3758581 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3814637 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs3862008 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs3862009 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4304697 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4638245 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55732648 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55748010 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55805503 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56083530 | 0.91[AMR][1000 genomes] |
rs57079861 | 0.95[EUR][1000 genomes] |
rs57431619 | 0.89[ASN][1000 genomes] |
rs57584668 | 0.95[EUR][1000 genomes] |
rs57822910 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs57957726 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs58269717 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs58349349 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs59826872 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs60204155 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs60214908 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs60378628 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs61153799 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61249521 | 0.93[EUR][1000 genomes] |
rs61604699 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs7076898 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7077029 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7088784 | 0.95[EUR][1000 genomes] |
rs7094920 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs733115 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs74150717 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs74150870 | 0.81[EUR][1000 genomes] |
rs74152352 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs74152356 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs74152357 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs74152360 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs74152362 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs74152364 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs74152369 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs74154112 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs74154119 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs74154124 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7896133 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7901123 | 0.88[EUR][1000 genomes] |
rs7907195 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs7910609 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7915727 | 0.95[EUR][1000 genomes] |
rs7917617 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9325473 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332092 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332093 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332098 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332108 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332137 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9332141 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332147 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332157 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332160 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332169 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332175 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332177 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332183 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332187 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332188 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332214 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332217 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332227 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332230 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9332245 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9663112 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9663214 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv497859 | chr10:96058024-97027747 | Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
2 | nsv1050653 | chr10:96407825-96634161 | Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1037364 | chr10:96435433-96634161 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | esv3380017 | chr10:96439904-96662339 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1046308 | chr10:96441300-96633012 | Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | esv3344949 | chr10:96443874-96666028 | Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv551955 | chr10:96444249-96690371 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv551956 | chr10:96446632-96632253 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
9 | nsv534171 | chr10:96453830-96612764 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
10 | nsv551957 | chr10:96454156-96626682 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
11 | nsv1047505 | chr10:96468200-96593083 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
12 | nsv540748 | chr10:96468200-96593083 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
13 | nsv1035409 | chr10:96495177-96832057 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
14 | nsv895902 | chr10:96500106-96619025 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG island | 2 gene(s) | inside rSNPs | diseases |
15 | esv3529538 | chr10:96522848-96700018 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
16 | esv3529539 | chr10:96522848-96700018 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
17 | esv3361914 | chr10:96522865-96700024 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
18 | nsv523259 | chr10:96534584-96693727 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
19 | nsv1052578 | chr10:96538082-96641949 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
20 | esv3336672 | chr10:96543010-96711519 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
21 | nsv895903 | chr10:96548132-96604273 | Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers | n/a | n/a | inside rSNPs | diseases |
22 | nsv895904 | chr10:96548132-96609064 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | n/a | n/a | inside rSNPs | diseases |
23 | nsv1037973 | chr10:96563228-96711744 | Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:96565800-96581600 | Weak transcription | Fetal Intestine Large | intestine |
2 | chr10:96566000-96580200 | Weak transcription | Duodenum Mucosa | Duodenum |
3 | chr10:96566200-96580200 | Weak transcription | Liver | Liver |
4 | chr10:96577000-96580200 | Weak transcription | Fetal Intestine Small | intestine |