Variant report

Variant	rs74150870
Chromosome Location	chr10:96406166-96406167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10509677	0.81[EUR][1000 genomes]
rs10509678	0.81[EUR][1000 genomes]
rs11568732	0.86[EUR][1000 genomes]
rs1409649	0.86[EUR][1000 genomes]
rs1409650	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1409651	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1409652	0.86[EUR][1000 genomes]
rs17110192	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17110194	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17110236	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17878673	0.81[EUR][1000 genomes]
rs17879263	0.82[EUR][1000 genomes]
rs17879992	0.81[EUR][1000 genomes]
rs17884832	0.81[EUR][1000 genomes]
rs17885348	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28399511	0.81[EUR][1000 genomes]
rs3740367	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3814637	0.82[EUR][1000 genomes]
rs4304697	0.81[EUR][1000 genomes]
rs4638245	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55706909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732648	0.81[EUR][1000 genomes]
rs55805503	0.81[EUR][1000 genomes]
rs56083530	0.86[EUR][1000 genomes]
rs57431619	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58269717	0.86[EUR][1000 genomes]
rs59278974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60204155	0.82[EUR][1000 genomes]
rs61153799	0.81[EUR][1000 genomes]
rs7076898	0.81[EUR][1000 genomes]
rs7077029	0.81[EUR][1000 genomes]
rs7094920	0.86[EUR][1000 genomes]
rs74152352	0.86[EUR][1000 genomes]
rs74152356	0.84[EUR][1000 genomes]
rs74152357	0.88[EUR][1000 genomes]
rs74152360	0.90[EUR][1000 genomes]
rs74152362	0.86[EUR][1000 genomes]
rs74152364	0.86[EUR][1000 genomes]
rs7896133	0.91[EUR][1000 genomes]
rs7907195	0.93[EUR][1000 genomes]
rs7917617	0.86[EUR][1000 genomes]
rs9663112	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs74150870	C10orf129	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96400400-96407200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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