Variant report

Variant	rs17110192
Chromosome Location	chr10:96441927-96441928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10509677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11568732	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1409649	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1409650	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409651	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409652	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17110194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110236	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17110321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17878382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17878627	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17878673	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17879263	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17879992	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17884832	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17885052	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17885348	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399511	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3740367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758581	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3814637	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4304697	0.95[GIH][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4638245	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55706909	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55732648	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55805503	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56083530	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57079861	0.81[EUR][1000 genomes]
rs57431619	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57584668	0.81[EUR][1000 genomes]
rs57822910	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57957726	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58269717	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58349349	0.83[AMR][1000 genomes]
rs59278974	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59826872	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60204155	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60214908	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61153799	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7076898	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7077029	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7088784	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs7094920	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74150870	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74152352	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74152356	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74152357	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74152360	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74152362	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74152364	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74152369	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74154112	0.91[AMR][1000 genomes]
rs7896133	0.95[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7907195	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7917617	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9663112	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9663214	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052478	chr10:96406313-96516804	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1037516	chr10:96407511-96516804	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1047944	chr10:96407825-96563288	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1050653	chr10:96407825-96634161	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1049341	chr10:96416809-96471236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1043604	chr10:96424393-96486504	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1037364	chr10:96435433-96634161	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv3380017	chr10:96439904-96662339	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1046308	chr10:96441300-96633012	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17110192	C10orf129	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96435200-96444800	Weak transcription	Gastric	stomach
2	chr10:96436000-96443400	Enhancers	Fetal Intestine Large	intestine
3	chr10:96436400-96442000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:96439600-96442800	Enhancers	HepG2	liver
5	chr10:96439600-96443200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:96440000-96442000	Weak transcription	Stomach Mucosa	stomach
7	chr10:96440200-96442200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:96440200-96443200	Enhancers	Fetal Intestine Small	intestine
9	chr10:96440800-96442600	Enhancers	A549	lung
10	chr10:96441600-96442000	Flanking Active TSS	Liver	Liver
11	chr10:96441600-96443400	Enhancers	Colonic Mucosa	Colon

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