Variant report

Variant	rs59278974
Chromosome Location	chr10:96389786-96389787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96389607..96390553-chr10:96935620..96936165,2	MCF-7	breast:
2	chr10:96389495..96390471-chr10:96935594..96936525,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11568732	0.86[EUR][1000 genomes]
rs1409649	0.86[EUR][1000 genomes]
rs1409650	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1409651	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1409652	0.86[EUR][1000 genomes]
rs17110192	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17110194	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17110236	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17878673	0.81[EUR][1000 genomes]
rs17879263	0.82[EUR][1000 genomes]
rs17879992	0.81[EUR][1000 genomes]
rs17884832	0.81[EUR][1000 genomes]
rs17885348	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3740367	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3814637	0.82[EUR][1000 genomes]
rs4304697	0.81[EUR][1000 genomes]
rs4638245	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55706909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805503	0.81[EUR][1000 genomes]
rs56083530	0.86[EUR][1000 genomes]
rs57431619	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58269717	0.86[EUR][1000 genomes]
rs60204155	0.82[EUR][1000 genomes]
rs61153799	0.81[EUR][1000 genomes]
rs7076898	0.81[EUR][1000 genomes]
rs7077029	0.81[EUR][1000 genomes]
rs7094920	0.86[EUR][1000 genomes]
rs74150870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74152352	0.86[EUR][1000 genomes]
rs74152356	0.84[EUR][1000 genomes]
rs74152357	0.88[EUR][1000 genomes]
rs74152360	0.90[EUR][1000 genomes]
rs74152362	0.86[EUR][1000 genomes]
rs74152364	0.86[EUR][1000 genomes]
rs7896133	0.91[EUR][1000 genomes]
rs7907195	0.93[EUR][1000 genomes]
rs7917617	0.86[EUR][1000 genomes]
rs9663112	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59278974	C10orf129	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96383600-96389800	Weak transcription	Fetal Intestine Large	intestine
2	chr10:96386800-96392600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:96386800-96397800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96387600-96391200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:96388400-96390200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:96388400-96391200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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