Variant report

Variant	rs9332631
Chromosome Location	chr1:169496211-169496212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169471872..169473392-chr1:169496086..169498392,2	MCF-7	breast:
2	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
3	chr1:169490192..169493609-chr1:169495804..169500257,7	MCF-7	breast:
4	chr1:169352595..169354140-chr1:169494261..169496429,2	MCF-7	breast:
5	chr1:169475721..169488506-chr1:169493331..169501885,21	MCF-7	breast:
6	chr1:169463786..169466732-chr1:169496061..169498768,2	MCF-7	breast:
7	chr1:169483273..169484944-chr1:169493711..169496257,2	MCF-7	breast:
8	chr1:169452411..169456753-chr1:169494976..169501006,10	MCF-7	breast:
9	chr1:169480009..169482936-chr1:169495810..169499823,3	K562	blood:
10	chr1:169454264..169456422-chr1:169495447..169500944,4	K562	blood:
11	chr1:169460825..169464071-chr1:169495499..169498354,3	MCF-7	breast:
12	chr1:169454264..169456897-chr1:169495447..169498143,3	K562	blood:
13	chr1:169347200..169349790-chr1:169495385..169498063,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198734	Chromatin interaction
ENSG00000117479	Chromatin interaction
ENSG00000213062	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9332605	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9332613	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9332671	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9332672	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872533	chr1:169490401-169508576	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169483200-169496800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:169483800-169496800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr1:169484800-169501000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:169485400-169510600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:169487400-169501000	Weak transcription	Right Ventricle	heart
6	chr1:169490800-169496800	Weak transcription	Pancreas	Pancrea
7	chr1:169490800-169496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:169491200-169497000	Weak transcription	Small Intestine	intestine
9	chr1:169491600-169500800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:169492000-169499800	Weak transcription	Left Ventricle	heart
11	chr1:169494000-169496800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:169494000-169502800	Strong transcription	HepG2	liver
13	chr1:169494400-169496400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:169494400-169498000	Enhancers	Primary hematopoietic stem cells	blood
15	chr1:169494800-169497000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:169494800-169499200	Enhancers	Stomach Mucosa	stomach
17	chr1:169495000-169497800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:169495200-169497800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr1:169495200-169498600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:169495400-169496400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:169495400-169498200	Weak transcription	Hela-S3	cervix
22	chr1:169495600-169497600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:169496000-169499200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:169496000-169515200	Strong transcription	Liver	Liver
25	chr1:169496200-169496400	Enhancers	Psoas Muscle	Psoas
26	chr1:169496200-169496600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:169496200-169496600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:169496200-169497600	Enhancers	HSMMtube	muscle
29	chr1:169496200-169498000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:169496200-169498000	Enhancers	Adipose Nuclei	Adipose
31	chr1:169496200-169498000	Enhancers	Duodenum Mucosa	Duodenum
32	chr1:169496200-169498000	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr1:169496200-169498400	Enhancers	Placenta	Placenta
34	chr1:169496200-169499000	Enhancers	Placenta Amnion	Placenta Amnion
35	chr1:169496200-169499000	Enhancers	Rectal Mucosa Donor 31	rectum

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