Variant report

Variant	rs9332672
Chromosome Location	chr1:169484245-169484246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169475240..169477243-chr1:169482171..169484444,2	MCF-7	breast:
2	chr1:169481648..169484694-chr1:169484880..169487777,3	MCF-7	breast:
3	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
4	chr1:169454713..169456671-chr1:169482911..169484828,2	K562	blood:
5	chr1:169451858..169456935-chr1:169476541..169486862,15	MCF-7	breast:
6	chr1:169483273..169484944-chr1:169493711..169496257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117479	Chromatin interaction
ENSG00000198734	Chromatin interaction
ENSG00000213062	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9332605	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9332613	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9332631	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9332671	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169478200-169487000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:169478800-169488200	Weak transcription	Small Intestine	intestine
3	chr1:169479400-169485000	Enhancers	Hela-S3	cervix
4	chr1:169481400-169485000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:169481800-169493000	Strong transcription	Liver	Liver
6	chr1:169482000-169484800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:169482600-169490800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:169482800-169487600	Weak transcription	Ovary	ovary
9	chr1:169483000-169484400	Weak transcription	Placenta	Placenta
10	chr1:169483200-169495400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:169483200-169496800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr1:169483600-169484800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:169483600-169486000	Strong transcription	HepG2	liver
14	chr1:169483800-169484800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr1:169483800-169486000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:169483800-169496800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr1:169484000-169484600	Enhancers	Stomach Mucosa	stomach
18	chr1:169484000-169484800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:169484000-169484800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr1:169484200-169484800	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr1:169484200-169487600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:169484200-169494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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