Variant report

Variant	rs9332663
Chromosome Location	chr1:169488664-169488665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169485665..169489624-chr1:169491207..169493940,4	K562	blood:
2	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
3	chr1:169464611..169466208-chr1:169487405..169490324,2	K562	blood:
4	chr1:169451766..169456144-chr1:169486998..169490272,6	MCF-7	breast:
5	chr1:169488300..169490005-chr1:169506177..169508361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117479	Chromatin interaction
ENSG00000213062	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3917745	1.00[AMR][1000 genomes]
rs3917845	1.00[AMR][1000 genomes]
rs9332572	1.00[AMR][1000 genomes]
rs9332578	1.00[AMR][1000 genomes]
rs9332622	1.00[AMR][1000 genomes]
rs9332626	1.00[AMR][1000 genomes]
rs9332632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332675	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169481800-169493000	Strong transcription	Liver	Liver
2	chr1:169482600-169490800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:169483200-169495400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:169483200-169496800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr1:169483800-169496800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:169484200-169494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:169484800-169490400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:169484800-169490400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:169484800-169501000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:169485000-169489800	Weak transcription	Placenta	Placenta
11	chr1:169485400-169510600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:169486600-169494400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:169486800-169490400	Strong transcription	HepG2	liver
14	chr1:169487000-169490600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:169487400-169501000	Weak transcription	Right Ventricle	heart
16	chr1:169487600-169488800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:169487800-169490200	Weak transcription	Stomach Mucosa	stomach
18	chr1:169488000-169492800	Weak transcription	Hela-S3	cervix
19	chr1:169488000-169493000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr1:169488400-169488800	Weak transcription	Small Intestine	intestine
21	chr1:169488400-169490200	Weak transcription	Rectal Mucosa Donor 31	rectum

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