Variant report

Variant	rs9332675
Chromosome Location	chr1:169482433-169482434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169475240..169477243-chr1:169482171..169484444,2	MCF-7	breast:
2	chr1:169481648..169484694-chr1:169484880..169487777,3	MCF-7	breast:
3	chr1:169480439..169483097-chr1:169493507..169495167,2	MCF-7	breast:
4	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
5	chr1:169467114..169469226-chr1:169481035..169483350,2	K562	blood:
6	chr1:169451858..169456935-chr1:169476541..169486862,15	MCF-7	breast:
7	chr1:169474592..169479041-chr1:169479760..169483418,4	K562	blood:
8	chr1:169481912..169483495-chr1:169489878..169491578,2	MCF-7	breast:
9	chr1:169480009..169482936-chr1:169495810..169499823,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000213062	Chromatin interaction
ENSG00000117479	Chromatin interaction
ENSG00000198734	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3917745	1.00[AMR][1000 genomes]
rs3917845	1.00[AMR][1000 genomes]
rs9332572	1.00[AMR][1000 genomes]
rs9332578	1.00[AMR][1000 genomes]
rs9332622	1.00[AMR][1000 genomes]
rs9332626	1.00[AMR][1000 genomes]
rs9332632	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332663	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169477800-169482600	Weak transcription	Placenta	Placenta
2	chr1:169477800-169482600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:169478000-169482600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:169478200-169482600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:169478200-169487000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:169478600-169482600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:169478600-169482600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:169478800-169482600	Weak transcription	Fetal Lung	lung
9	chr1:169478800-169484000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:169478800-169488200	Weak transcription	Small Intestine	intestine
11	chr1:169479400-169482600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:169479400-169485000	Enhancers	Hela-S3	cervix
13	chr1:169479600-169482600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:169480000-169483000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:169480600-169483600	Weak transcription	HepG2	liver
16	chr1:169480800-169483800	Weak transcription	HSMMtube	muscle
17	chr1:169481000-169484000	Weak transcription	Stomach Mucosa	stomach
18	chr1:169481200-169484000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:169481400-169482600	Weak transcription	NHDF-Ad	bronchial
20	chr1:169481400-169483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:169481400-169485000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:169481600-169482600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:169481800-169483600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:169481800-169483800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:169481800-169493000	Strong transcription	Liver	Liver
26	chr1:169482000-169482600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr1:169482000-169483600	Enhancers	Adipose Nuclei	Adipose
28	chr1:169482000-169484800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:169482200-169483000	Enhancers	Osteobl	bone
30	chr1:169482400-169482600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:169482400-169483000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:169482400-169483000	Enhancers	HMEC	breast
33	chr1:169482400-169483000	Enhancers	NHLF	lung
34	chr1:169482400-169483200	Genic enhancers	Monocytes-CD14+_RO01746	blood
35	chr1:169482400-169483200	Enhancers	NHEK	skin

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