Variant report

Variant	rs9332666
Chromosome Location	chr1:169486641-169486642
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr1:169486590-169487403	MCF-7	breast:	n/a	n/a
2	GATA3	chr1:169486574-169487484	MCF-7	breast:	n/a	n/a
3	SIN3AK20	chr1:169486581-169487519	MCF-7	breast:	n/a	n/a
4	GATA3	chr1:169486408-169487645	MCF-7	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169485665..169489624-chr1:169491207..169493940,4	K562	blood:
2	chr1:169486560..169487382-chr1:169498336..169499053,4	MCF-7	breast:
3	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
4	chr1:169485353..169488291-chr1:169497708..169499497,2	K562	blood:
5	chr1:169451858..169456935-chr1:169476541..169486862,15	MCF-7	breast:
6	chr1:169454012..169455530-chr1:169485281..169486791,2	K562	blood:
7	chr1:169486047..169488375-chr1:169489755..169492077,3	MCF-7	breast:

No data

Variant related genes	Relation type
F5	TF binding region
ENSG00000213062	Chromatin interaction
ENSG00000117479	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10737547	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2213868	0.88[AMR][1000 genomes]
rs2420370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2420371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2420372	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4264045	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6427194	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6427195	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6427196	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6427197	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6670848	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6682179	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6687813	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs970740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169478200-169487000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:169478800-169488200	Weak transcription	Small Intestine	intestine
3	chr1:169481800-169493000	Strong transcription	Liver	Liver
4	chr1:169482600-169490800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr1:169482800-169487600	Weak transcription	Ovary	ovary
6	chr1:169483200-169495400	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:169483200-169496800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr1:169483800-169496800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr1:169484200-169487600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:169484200-169494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:169484600-169487400	Weak transcription	Stomach Mucosa	stomach
12	chr1:169484800-169490400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:169484800-169490400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:169484800-169501000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:169485000-169489800	Weak transcription	Placenta	Placenta
16	chr1:169485200-169487600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:169485400-169510600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:169486000-169486800	Weak transcription	HepG2	liver
19	chr1:169486600-169488000	Enhancers	Hela-S3	cervix
20	chr1:169486600-169494400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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